public class SmithWaterman3DParameters extends java.lang.Object implements ConfigStrucAligParams
Constructor and Description |
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SmithWaterman3DParameters() |
Modifier and Type | Method and Description |
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java.lang.Short |
getGapExtend() |
java.lang.Short |
getGapOpen() |
java.util.List<java.lang.String> |
getUserConfigHelp()
The help text for each of these parameters.
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java.util.List<java.lang.String> |
getUserConfigParameterNames()
The labels to be displayed to the user for each parameter
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java.util.List<java.lang.String> |
getUserConfigParameters()
get the list of parameters that the user can change through the user interface.
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java.util.List<java.lang.Class> |
getUserConfigTypes()
Get the data types of the parameters
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void |
reset()
Set the parameters to the default.
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void |
setGapExtend(java.lang.Short gapExtend) |
void |
setGapOpen(java.lang.Short gapOpen) |
public java.util.List<java.lang.String> getUserConfigHelp()
ConfigStrucAligParams
getUserConfigHelp
in interface ConfigStrucAligParams
public java.util.List<java.lang.String> getUserConfigParameterNames()
ConfigStrucAligParams
getUserConfigParameterNames
in interface ConfigStrucAligParams
public java.util.List<java.lang.String> getUserConfigParameters()
ConfigStrucAligParams
getUserConfigParameters
in interface ConfigStrucAligParams
public java.util.List<java.lang.Class> getUserConfigTypes()
ConfigStrucAligParams
getUserConfigTypes
in interface ConfigStrucAligParams
public void reset()
ConfigStrucAligParams
reset
in interface ConfigStrucAligParams
public java.lang.Short getGapExtend()
public void setGapExtend(java.lang.Short gapExtend)
public java.lang.Short getGapOpen()
public void setGapOpen(java.lang.Short gapOpen)