Package ngs
Interface PileupIterator
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Field Summary
Fields inherited from interface ngs.PileupEvent
alignment_minus_strand, alignment_start, alignment_stop, deletion, insertion, insertion_before_deletion, insertion_before_match, insertion_before_mismatch, intron_minus, intron_plus, intron_unknown, match, mismatch, normal_indel, read_gap, read_overlap, replacement
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Method Summary
Modifier and TypeMethodDescriptionboolean
Advance to first Pileup on initial invocation advance to next Pileup subsequentlyMethods inherited from interface ngs.Pileup
getPileupDepth, getReferenceBase, getReferencePosition, getReferenceSpec
Methods inherited from interface ngs.PileupEvent
getAlignmentBase, getAlignmentId, getAlignmentPosition, getAlignmentQuality, getEventIndelType, getEventRepeatCount, getEventType, getFirstAlignmentPosition, getInsertionBases, getInsertionQualities, getLastAlignmentPosition, getMappingQuality
Methods inherited from interface ngs.PileupEventIterator
nextPileupEvent, resetPileupEvent
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Method Details
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nextPileup
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