primaryAlignment
static final int primaryAlignment
- See Also:
Fragment
AlignmentIterator
static final int
static final int
static final int
static final int
static final int
static final int
static final int
static final int
static final int
static final int
static final int
int
long
long
boolean
getLongCigar(boolean clipped)
int
boolean
char
getShortCigar(boolean clipped)
int
getSoftClip(int edge)
long
boolean
hasMate()
getFragmentBases, getFragmentBases, getFragmentBases, getFragmentId, getFragmentQualities, getFragmentQualities, getFragmentQualities, isAligned, isPaired