Run workflows implemented in Terra/AnVIL workspace


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Documentation for package ‘AnVILWorkflow’ version 1.4.0

Help Pages

.search_keyword Search keywords in a given metadata table
AnVILBrowse Search AnVIL workspaces using keywords
availableAnalysis Find the available analysis
cloneWorkspace Clone template workspace
currentInput Check the current input arguments
findInputName Find the root entity name
getAllDataTables Get all the data tables
getAllWorkflows Collect workflows from all workspaces a user has access to
getAllWorkspaces Get AnVIL workspaces
getDashboard Print out Dashboard contents
getData Creates a metadata table of data from all workspaces provided
getOutput Download output files from Terra
getWorkflowConfig Check the workflow configuration
getWorkflows Creates a metadata table of workflows from all workspaces provided
getWorkspaces Creates a metadata table of all workspaces
monitorWorkflow Check the status of submitted jobs
runWorkflow Launch Terra workflow
setCloudEnv Setup Google Cloud Account and Project
stopWorkflow Abort submitted job
updateInput Update the input